Authors: Scott E. Collibee, Antonio Romero, Alexander R. Muci, Darren T. Hwee, Chihyuan Chuang, James J. Hartman, Alykhan S. Motani, Luke Ashcraft, Andre DeRosier, Mark Grillo, Qing Lu, Fady I. Malik, Bradley P. Morgan
Categories: Article
Source: Journal of Medicinal Chemistry
Activator CK-963 Increases Cardiac Contractility in Rats
Authors: Scott E. Collibee, Antonio Romero, Alexander R. Muci, Darren T. Hwee, Chihyuan Chuang, James J. Hartman, Alykhan S. Motani, Luke Ashcraft, Andre DeRosier, Mark Grillo, Qing Lu, Fady I. Malik, Bradley P. Morgan
Novel cardiac troponin activators were identified using a high throughput cardiac myofibril ATPase assay and confirmed using a series of biochemical and biophysical assays. HTS hit 2 increased rat cardiomyocyte fractional shortening without increasing intracellular calcium concentrations, and the biological target of 1 and 2 was determined to be the cardiac thin filament. Subsequent optimization to increase solubility and remove PDE-3 inhibition led to the discovery of CK-963 and enabled pharmacological evaluation of cardiac troponin activation without the competing effects of PDE-3 inhibition. Rat echocardiography studies using CK-963 demonstrated concentration-dependent increases in cardiac fractional shortening up to 95%. Isothermal calorimetry studies confirmed a direct interaction between CK-963 and a cardiac troponin chimera with a dissociation constant of 11.5 ± 3.2 μM. These results provide evidence that direct activation of cardiac troponin without the confounding effects of PDE-3 inhibition may provide benefit for patients with cardiovascular conditions where contractility is reduced.
Heart failure (HF) is a heterogeneous condition that is defined by the inability of the heart to pump enough blood through the body to enable normal physiological function.^1,2^ HF affects over 64 million people worldwide, and approximately half will die within five years of initial hospitalization.^3^ The prognosis for patients remains poor despite recent advances in medical treatment, and the total HF cost is expected to reach $160 billion dollars in the United States by 2030.^4,5^ New drugs with improved efficacy and safety profiles are clearly needed to support this increasingly large patient population.
Calcitrope^6^ drugs such as dobutamine, milrinone, and digoxin are among the numerous options for the treatment of HF.^7^ These compounds show beneficial improvements in cardiac contractility through the activation of secondary messenger pathways that increase cardiomyocyte calcium concentrations, but this mechanism also makes the heart less efficient by increasing myocardial oxygen consumption and activating calcium-dependent signaling cascades.^8^ Subsequent detrimental changes in myocardial energetics lead to negative clinical outcomes with long-term calcitrope drug use as exemplified by the malignant arrythmias and systemic hypotension that have been observed with the phosphodiesterase-3 (PDE-3) inhibitor milrinone.^9,10^
Heart Failure with reduced ejection fraction (HFrEF) is a form of HF that affects over 23 million people and occurs when decreased cardiac contractility reduces left ventricular ejection fraction to less than 40% with concomitant progressive left ventricular dilatation and adverse cardiac remodeling.^11^ Direct activation of the cardiac sarcomere using myotropes,^6^ compounds that directly interact with the molecular motor or scaffolding of the heart, to increase cardiac contractility without increasing intracellular calcium concentrations is a recent approach for the treatment of HFrEF.^12–14^ Omecamtiv mecarbil (OM, Figure 1) is the first direct cardiac sarcomere activator that allosterically binds to cardiac myosin and improves cardiac muscle contractility by increasing the rate of phosphate release and the proportion of myosin heads forming force-generating interactions with actin (otherwise known as the duty ratio)^15,16^ In a phase 3 trial in patients with HFrEF, OM reduced the number of HF events, with patients having the lowest ejection fractions showing the largest response.^17^ OM did not show an increase in the frequency of cardiac ischemic and ventricular arrhythmia events.

The ability of cardiac myosin activator OM to improve
clinical
outcomes for HF patients prompted our research team to explore the
activation of other targets within the cardiac sarcomere to find differentiated
and complementary approaches to the treatment of HF. There have been
numerous reports of compounds known as calcium sensitizers that sensitize
cardiac muscle to calcium and increase force production without increasing
intracellular calcium concentrations (Figure 2).^14^ Most reported
calcium sensitizers also have biological activity against other targets
like PDE-3 that are known to modulate cardiac function and could obfuscate
the pharmacological effect of a selective calcium sensitizer. Levosimendan
is a calcium sensitizer that has been approved in many countries for
the treatment of acutely decompensated congestive HF.^18^ Levosimendan binds to cTnC (Kd = 0.1–0.7 mM) but also has numerous other biological activities
including single digit nanomolar PDE-3 inhibition that have been proposed
to account for the observed clinical effect and could explain an adverse
event profile that is similar to other PDE-3 inhibitors.^19−24^ MCI-154 sensitizes cardiac muscle to calcium but also inhibits PDE-3
at similar potencies.^25^ EMD 57033 shows
similar calcium sensitization and PDE-3 inhibitory activity with increased
myofilament ATPase activity in systems devoid of troponin/tropomyosin.^26,27^ CGP 48506 was the first reported compound to sensitize cardiac muscle
to calcium without PDE-3 inhibitory activity, but no in vivo pharmacological studies have been reported with this compound.^28,29^

A research program was initiated
with the goal of finding compounds
that directly sensitize cardiac troponin to calcium without inhibition
of PDE-3 to enable pharmacological investigation. A high throughput
screen of an internal compound collection with a pyruvate kinase and
lactate dehydrogenase reporter system that measures the rate of adenosine
triphosphate (ATP) hydrolysis in cardiac myofibrils was performed
to discover new cardiac sarcomere modulators.^30−35^ Sulfonamides 1 and 2 were identified as
structurally related screening hits with cardiac myofibril biochemical
AC40 values of 5.5 and 1.1 μM respectively (AC40 is defined as the concentration of compound that increases
the myofibril ATP hydrolysis rate by 40% at calcium concentrations
that produce 25% of the maximum calcium-dependent activation in a
control experiment.) Compound 2 was inactive against
fast skeletal myofibrils and smooth muscle myosin but showed similar
activity in the cardiac and slow skeletal myofibril assays (Figure 3). The lack of selectivity
between cardiac and slow skeletal myofibrils suggests that 2 may primarily interact with either cardiac myosin or the cardiac
thin filament component troponin C (TnC) since both sarcomere constituents
are shared between cardiac and slow skeletal muscle.^36,37^

Cardiomyocyte experiments were performed to determine
if 2 met the key objective of activating cardiac myofibrils
without
increasing calcium flux. Adult male Sprague–Dawley rat cardiomyocytes
were stimulated at 1 Hz at 37 °C, and quiescent myocytes with
well-defined striations were selected for contractility assessment.
Subsequent treatment with 2 (10 μM) significantly
increased myocyte fractional shortening compared to untreated cells
over a single contraction cycle without changing intracellular calcium
concentrations (Figure 4). The myocyte relaxation velocity was 55.4 ± 18.2 μm/s
(23% greater than basal) and the relaxation time to baseline (T50) was 0.308 ± 0.059 s (30% greater than
basal). These results demonstrate the translation of cardiac myofibril
ATPase biochemical activity to an increase in cardiomyocyte contractility
without changing intracellular calcium levels.

The biological target of 1 and 2 was investigated using a sarcomere component swap experiment. Reconstituted sarcomeres^14^ composed of the four possible combinations of cardiac myosin S1, fast skeletal myosin S1, cardiac thin filament, and fast skeletal thin filament were treated with 1 and 2 at a single concentration (40 μM). Only the reconstituted sarcomeres that contain the cardiac thin filament showed activation when treated with the cardiac myofibril activators (Figure 5), implying that the target of these compounds is within the cardiac thin filament and the compounds were not direct cardiac myosin activators.

After confirmation that the target was a component
of the cardiac
thin filament, a series of structurally related analogs of sulfonamide 2 were synthesized to identify key binding interactions (Table 1). Hybridization of 1 and 2 provided biarylsulfonamide 3 with significantly improved cardiac myofibril biochemical potency
(AC40 = 0.1 μM) compared to the HTS hits, but this
compound also possessed PDE-3 inhibitory activity (IC50 = 4.6 μM). Incorporation of a methyl group at the 1- position
(5) did not change biochemical potency or PDE-3 inhibition,
but removal of the sulfonamide hydrogen bond donor by either methylation
(4) or replacement with oxygen or carbon atoms (data
not shown) led to a significant loss in biochemical potency. The solubility
of 5 in the PDE-3 buffer solution was 1.2 μM, indicating
potentially greater PDE-3 inhibition than is reflected by the IC50 measurement of 4.6 μM.
A summary of properties for 2 and 3 is
shown in Table 2. These
compounds were potent in both cardiac and slow skeletal myofibrils
but did not activate fast skeletal myofibrils or smooth muscle myosin.
As stated above, cardiac and slow skeletal muscle have identical myosin
and TnC, and the similar level of biochemical activity observed in
cardiac and slow skeletal muscle for 2 and 3 along with the results of the reconstituted sarcomere assay suggest
the possibility of a molecular interaction that involves TnC. Both
compounds possess properties that were expected to make pharmacological
assessment challenging, specifically PDE-3 IC50 < 5
μM and low single digit μM aqueous solubility, but were
still considered to be reasonable starting points for optimization.
The primary optimization objective was to identify
potent (<1
μM) cardiac myofibril activators that do not inhibit PDE-3 to
enable pharmacological assessment. Improvements in solubility were
also needed to ensure accurate PDE-3 inhibition data at higher concentrations
and to enable intravenous (IV) dosing. A series of compounds that
replaced the biaryl ring with substituents designed to improve solubility
by increasing sp3 character and PSA were synthesized (Table 3). Replacement of
the internal ring of the biaryl with a 3-pyridyl ring (7) was tolerated but with a significant loss in potency compared to
biaryl 3. 2-Pyridyl 9 and 3-pyrimidine 8 were inactive at 40 μM. Several aminopyridine analogs
based on azepane 2 were synthesized (10–15). The 3,5-trans-dimethylpiperidine substituent
(13) was the most potent aminopyridine but showed PDE-3
inhibitory activity (IC50 = 7 μM). The importance
of lipophilic piperidine substituents on biochemical potency is exemplified
by inactive piperidine 10 and the >40x eudismic ratio
observed with piperidines 13 and 14.
PDE-3 inhibition was significantly reduced by replacement
of the
quinazolinedione ring with a quinazolinone ring (e.g., the aforementioned PDE-3 activity of 13vs16). Comparison of 16 and 13 show that this ring substitution provides a greater than 5-fold
reduction in PDE-3 inhibition but also a 10-fold decrease in biochemical
potency (Table 4).
Substitution at the 7- position of the quinazolinone ring provided
analogs 17, 18, and CK-963 with
improved biochemical potency. Rat pharmacokinetic assessment of 17, 18, and CK-963 dosed IV in rats showed clearance
values < 25% of hepatic blood flow (Qh) and half-lives
between 0.6 to 2.3 h. CK-963 possessed the desired IV
exposure profile and solubility in a suitable formulation vehicle
and was selected for in vivo assessment of cardiac
function by echocardiography in rats.
CK-963 has a muscle selectivity profile and mechanism of action similar to HTS hits 1 and 2.^38^ It was selective against fast skeletal myofibrils and smooth muscle myosin and active only in reconstituted sarcomere systems that contained the cardiac thin filament, suggesting that the target is a component of the cardiac troponin regulatory complex. Isothermal calorimetry (ITC) studies confirmed that CK-963 was directly interacting with a cardiac troponin chimera (cNTnC–TnI, 15 kDa) that contains the calcium-sensing and myosin-gating components of troponin. The dissociation constant for this interaction was 11.5 ± 3.2 μM, with changes in enthalpy of −10.3 ± 2.1 kcal/mol and entropy of −12.0 ± 7.5 kcal/(K) (mol). This outcome, along with the result of the sarcomere component swap experiment provides evidence that cardiac troponin is the target of CK-963. The calorimetry result is consistent with previously reported ITC studies using an advanced member of this chemical series that were applied in combination with solution nuclear magnetic resonance to provide the basis for a structural and thermodynamic model for the activation of cardiac troponin.^39^
A series of experiments in anesthetized Sprague–Dawley rats
were performed to evaluate the effect of the selective cardiac troponin
activator CK-963 on cardiac function. CK-963 was tested on three separate occasions using continuous or stepwise
infusion with cumulative doses as high as 199 mg/kg. Echocardiographic
measurements of cardiac contraction were performed throughout the
infusion period. Left ventricular fractional shortening (LVFS), the
percent change in left ventricular diameter during a contractile cycle,
was the primary pharmacodynamic readout with increases in LVFS indicating
increased cardiac contractility. The pharmacodynamic response of cardiac
function to CK-963 is plotted as percent change in LVFS
relative to baseline as a function of total or unbound plasma concentrations
(Figure 6). CK-963 increased fractional shortening by about 10% at 9.5 μM total
plasma concentration and 0.4 μM unbound plasma concentration
(determined by a nonlinear fit of pooled fractional shortening and
plasma concentration values using GraphPad software).^40^ At the highest plasma concentrations measured in these
infusion studies (∼100 μM), fractional shortening increased
by nearly 100%. The unbound concentration needed to increase fractional
shortening by 40% in the echocardiography study was 1.2 μM and
is similar to the cardiac myofibril AC40 biochemical potency
of 0.7 μM for CK-963.

The synthesis of CK-963 is shown in Scheme 1. Acid-catalyzed
cyclization
of commercially available aminoester 20 provided quinazolinone 21, followed by installation of the sulfonyl chloride in two
steps from 21 using a palladium-catalyzed cross-coupling
reaction with benzyl mercaptan and then treatment with N-chlorosuccinimide (NCS) and acetic acid.^41,42^ Sulfonamide 24 was synthesized using a coupling reaction
of sulfonyl chloride 23 and amine 30 in
the presence of pyridine. Similar coupling conditions using commercially
available amines and sulfonyl chlorides were applied to the synthesis
of the other sulfonamide analogs in this paper. Dihydroquinazoline CK-963 was synthesized using an SnAr reaction of
aryl fluoride 24 and 2-morpholinoethan-1-ol using sodium
hydride as the base.

Amine 30 was synthesized starting with the separation of an 80% trans/cis mixture of commercially available 3,5-dimethylpiperidine by first benzylating the 3,5-dimethylpiperidine mixture, followed by silica gel column chromatography and then debenzylation using palladium on carbon under a hydrogen atmosphere to give trans 3,5-dimethylpiperidine (27) (Scheme 2). Enantiomerically pure nitropyridine 29 was synthesized using an SnAr reaction of 2-chloro-5-nitropyridine and 27, followed by chiral separation with supercritical fluid chromatography (SFC). Reduction of the nitro group using palladium on carbon under a hydrogen atmosphere provided amine 30.

Medicinal chemistry optimization of a cardiac troponin activator series using cardiac myofibril high throughput screening led to CK-963, a compound with sub micromolar biochemical potency, acceptable solubility in a suitable formulation vehicle, selectivity against PDE-3, and adequate exposure in rats to enable pharmacological evaluation of a selective cardiac troponin activator. Rat echocardiography studies using CK-963 showed significant increases in LVFS, and the unbound concentration needed to increase fractional shortening by 10% was about half of the cardiac myofibril biochemical potency. We provide evidence that cardiac troponin is the target of CK-963 based on the direct interaction measured in the ITC study as well as results of the sarcomere component swap experiment that showed activation only occurred in reconstituted sarcomeres containing the cardiac thin filament. Subsequent research activities led to the discovery of a structurally distinct cardiac troponin activator series and a compound that is currently being evaluated in phase I clinical studies, nelutroctiv. This medicinal chemistry discovery story is described in the subsequent article.^43^ Both novel cardiac troponin activators CK-963 and nelutroctiv could utilized as tool compounds to further understand the mechanisms that regulate cardiac contractile kinetics.^44^
All solvents and reagents were
purchased from commercial vendors and used without further purification. ^1^H NMR were recorded at ambient temperature at 400.13 MHz using
a Bruker AVANCE 400 spectrometer. ^1^H shifts are referenced
to the residual protonated solvent signal (δ 2.50 for DMSO-d6, δ 3.31 for MeOH-d4, δ 7.24 for CDCl3). The data are reported
as chemical shift in ppm from internal tetramethylsilane
on the δ scale, multiplicity (br = broad, s = singlet, d = doublet,
t = triplet, q = quartet, m = multiplet), coupling constants (Hz),
and integration. Mass spectrometry data were obtained using an Agilent
LC/MSD Quad VL system. Normal phase liquid chromatography was performed
using forced flow (flash chromatography) of the indicated solvent
system on EM Reagents silica gel (SiO2) 60 (230–400
mesh) or using a Biotage Horizon MPLC with Biotage KP-Sil silica gel
columns. Reverse phase HPLC purification was performed with an Agilent
Series 1100 HPLC equipped with a Phenomenex Gemini C18 Column (5 μm,
150 × 21.2 mm). The typical gradient used for the mobile phase
was 20% acetonitrile/water to 90% acetonitrile/water in the presence
of 0.1% formic acid over 40 min unless otherwise specified. Unless
otherwise noted, the purity for compounds was judged to be >95%
as
determined by ^1^H NMR and HPLC at 254 nm. All animal experiments
described in this manuscript were performed in compliance with Institutional
Animal Care and Use Committee (IACUC) guidelines.
To
a 20 mL scintillation vial was added amine (1.2 equiv), DMF (0–4
mL/mmol), and pyridine (2.0 equiv), followed by sulfonyl chloride.
The reactions were generally stirred for 1–24 h. Some were
concentrated and purified using reverse phase HPLC (20–90%
CH3CN/H2O over 35 min), and others were worked
up using EtOAc and saturated sodium bicarbonate followed by silica
gel purification.
(CK-963)
To a 250 mL round-bottom flask was
added 2-morpholinoethan-1-ol (16.3 g, 15.0 mL, 124 mmol, 1.7 equiv),
followed by sodium hydride (60% dispersion in mineral oil, 1.9 g,
72.0 mmol, 1.0 equiv) in small portions with stirring. The reaction
mixture was stirred for 1 h, followed by the addition of N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-7-fluoro-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
(3.2 g, 72.0 mmol). The reaction mixture was transferred to a microwave
reaction tube, sealed, and heated in a microwave reactor at 130 °C
for 90 min. The reaction mixture was then concentrated and purified
using reverse phase HPLC (20–90% CH3CN/H2O over 35 min). Ethyl acetate and saturated sodium carbonate solution
were used to dissolve the resultant solid, and the organic layer was
separated and dried over sodium sulfate to give 1.6 g (40%) of N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-2-methyl-5-(2-morpholinoethoxy)-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
as a white solid. ^1^H NMR (400 MHz, DMSO-d6) δ 12.35 (s, 1H), 9.18 (s, 1H), 8.15 (s, 1H),
7.62 (d, J = 2.6 Hz, 1H), 7.31 (s, 1H), 7.11 (dd, J = 9.1, 2.8 Hz, 1H), 6.65 (d, J = 9.1
Hz, 1H), 4.47 (t, J = 5.3 Hz, 2H), 3.53–3.37
(m, 6H), 3.06 (dd, J = 12.8, 6.8 Hz, 2H), 2.85–2.75
(m, 2H), 2.57–2.50 (m, 4H), 2.34 (s, 3H), 1.83 (pd, J = 6.4, 3.9 Hz, 2H), 1.37 (t, J = 5.8
Hz, 2H), 0.82 (d, J = 6.8 Hz, 6H). LRMS (APCI): calcd
for C27H36N6O5S 556.3
Da, measured 557.3 m/z [M + H]^+^.
To a
85/15 mixture of trans/cis 3,5-dimethylpiperidine
(TCI, 320 mL, 2.35 mmol) and K2CO3 (960 g, 6.96
mol) in acetone (8 L) was slowly added benzyl bromide (488 mL, 4.08
mol) while using a water bath to control the reaction temperature
below 40 °C. The reaction was stirred at rt for 4 d. The reaction
was then filtered, and the filtrate washed with acetone (1 L). The
combined filtrates were concentrated and purified using silica gel
chromatography (0–5% diethyl ether in hexanes with 0.2% TEA)
to give racemic trans-3,5-dimethylpiperidine (200
g, 43%). ^1^H NMR (400 MHz, Chloroform-d) δ 7.34–7.15 (m, 5H), 3.54–3.28 (m, 2H), 2.37
(d, J = 9.1 Hz, 2H), 2.13–1.97 (m, 2H), 1.90
(ddp, J = 10.0, 6.3, 3.6 Hz, 2H), 1.28 (t, J = 5.8 Hz, 2H), 0.95 (d, J = 6.8 Hz, 6H).
LC/MS (APCI) m/z calcd for C14H21N 203.2 Da, measured 204.1 m/z [M + H]^+^.
To a solution of racemic trans-3,5-dimethylpiperidine
(80.0 g, 0.39 mol) in MeOH (500 mL) was added 20% Pd/C (2.1 g, 0.02
mol, Johnson Matthey A402023–20). The reaction was stirred
under hydrogen (25 psi) at 45 °C for 12 h and then filtered through
Celite. To the filtrate was added HCl (4 N in dioxane, 200 mL) followed
by concentration to give trans-3,5-dimethylpiperidin-1-ium
chloride (59.0 g, 100%) as a white solid. ^1^H NMR (400 MHz,
Methanol-d4) δ 3.14 (dd, J = 12.6, 4.0 Hz, 2H), 2.83 (dd, J = 12.5,
7.0 Hz, 2H), 2.20–2.06 (m, 2H), 1.55 (t, J = 5.8 Hz, 2H), 1.07 (d, J = 7.1 Hz, 6H).
To a 2 L round-bottom flask was added trans-3,5-dimethylpiperidin-1-ium
chloride (66.7 g, 446 mmol, 1.2 equiv), 2-chloro-5-nitropyridine (60.1
g, 379 mmol, 1.0 equiv), DMF (250 mL), and triethylamine (137 mL,
1000 mmol, 2.6 equiv). The reaction was heated to 90 °C and stirred
overnight. The reaction was then diluted with EtOAc (1 L) and washed
three times with brine (200 mL each wash). The organic layer was dried
over sodium sulfate, filtered, and concentrated. The resultant crude
solid was dissolved in a minimum of EtOAc, followed by the addition
of 20% EtOAc/hexanes (50 mL). Hexanes were then added until precipitation
was observed, and the reaction suspension was stirred at rt for 14
h. The product was filtered, washed with 20% EtOAc/hexanes, and then
dried under vacuum to give 2-(trans-3,5-dimethylpiperidin-1-yl)-5-nitropyridine
(31.0 g, 29%) as a pale yellow solid. ^1^H NMR (400 MHz,
Chloroform-d) δ 8.99 (d, J = 2.8 Hz, 1H), 8.12 (ddd, J = 9.6, 2.9, 0.6 Hz,
1H), 6.52 (d, J = 9.6 Hz, 1H), 3.80 (d, J = 12.3 Hz, 2H), 3.36 (dd, J = 13.2, 7.1 Hz, 2H),
2.01 (ddp, J = 10.4, 6.4, 4.0 Hz, 2H), 1.52 (t, J = 5.9 Hz, 2H), 0.94 (d, J = 6.8 Hz, 6H).
LC/MS (APCI) m/z calcd for C12H17N3O2 235.1 Da, measured
236.1 m/z [M + H]^+^.
(Enantiomer 1) and 2-((3R,5R)-3,5-dimethylpiperidin-1-yl)-5-nitropyridine (Enantiomer 2)
2-(trans-3,5-dimethylpiperidin-1-yl)-5-nitropyridine
(1.1 g) was resolved using chiral SFC (Chiralcel AD-H, 20% (1:1) isopropanol/MeCN/CO2, 100 bar, 62 mL/min) to give enantiomer 1 (525 mg, [α]^20^/D = +41.4° (c 0.95, EtOAc)) and enantiomer
2 (520 mg, [α]^20^/D = −45.0 (c 0.91,
EtOAc)). Enantiomers were numbered based on the order of elution,
and the absolute stereochemistry of enantiomer 2 was assigned as R,R based on the crystal structure of 19. Enantiomer 1 was therefore assigned as S,S.
2-((3R,5R)-3,5-Dimethylpiperidin-1-yl)-5-nitropyridine
(350 mg, 1.49 mmol, 1 equiv) and Pd/C (80 mg, 0.075 mmol, 0.05 equiv)
were suspended in MeOH (35 mL) and stirred under hydrogen (30 psi)
for 1 h. The reaction mixture was then filtered through a pad of Celite
and concentrated to give 6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-amine (300 mg). LC/MS (APCI) m/z calcd for C12H19N3 205.1 Da, measured 206.1 m/z [M + H]^+^.
A mixture of N-methyl-[1,1′-biphenyl]-4-amine
(75 mg, 0.41 mmol, 1 equiv) and pyridine (55 mg, 0.70 mmol, 1.6 equiv)
was dissolved in DMF (0.5 mL) and was added to a solution of 2,4-dioxo-1,3-dihydroquinazoline-6-sulfonyl
chloride (107 mg, 0.41 mmol, 1 equiv) in DMF (0.5 mL). The reaction
mixture was stirred at rt overnight. Methanol (5 mL) was then added
to the pink heterogeneous reaction mixture, followed by stirring for
1 h and sonication for 5 min. The resultant solid was filtered and
dried to give 87 mg (52%) of pale beige solid. ^1^H NMR (400
MHz, DMSO-d6) δ 11.66–11.58
(m, 2H), 7.96 (d, J = 2.2 Hz, 1H), 7.72 (dd, J = 8.6, 2.2 Hz, 1H), 7.66 (dt, J = 8.5,
2.9 Hz, 4H), 7.47 (t, J = 7.6 Hz, 2H), 7.38 (t, J = 7.3 Hz, 1H), 7.30 (d, J = 8.6 Hz, 1H),
7.22 (d, J = 8.5 Hz, 2H), 3.16 (s, 3H). LRMS (APCI):
calcd for C21H17N3O4S
407.1 Da, measured 406.0 m/z [M
– H]^−^.
To a 250-round-bottom flask containing 6-fluoropyridin-3-amine
(1.22 g, 10.9 mol, 1 equiv), and pyridine (1.78 g, 1.75 mL, 21.8 mmol,
2.0 equiv) at 0 °C was added a suspension of 1-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-sulfonyl
chloride (3.0 g, 10.9 mmol, 1.0 equiv) and CH2Cl2 (50 mL). The reaction was stirred at 0 °C for 1 h and then
warmed to rt. The reaction was concentrated, and then methanol (35
mL) was added. The mixture was sonicated and the resultant solids
were filtered to give N-(6-fluoropyridin-3-yl)-1-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-sulfonamide
(3.8 g, 89%) as a tan solid.
(10)
To a 5 mL microwave reaction vial was added N-(6-fluoropyridin-3-yl)-1-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-sulfonamide
(100 mg, 0.29 mmol, 1 equiv) dissolved in NMP (3 mL), triethylamine
(0.5 mL), and piperidine (102 mg, 1.2 mmol, 4.0 equiv). The microwave
tube was sealed, heated to 220 °C, and stirred for 30 min. The
reaction was then cooled, followed by addition of formic acid (1 mL)
and purification using reverse phase HPLC (20–90% CH3CN/H2O over 35 min) to give 2,4-dioxo-N-(5-phenylpyridin-2-yl)-1,2,3,4-tetrahydroquinazoline-6-sulfonamide
(61 mg, 52%). ^1^H NMR (400 MHz, Methanol-d4) δ 8.40
(d, J = 2.3 Hz, 1H), 7.99 (dd, J = 8.8, 2.3 Hz, 1H), 7.65 (d, J = 2.8 Hz, 1H), 7.51
(d, J = 8.8 Hz, 1H), 7.30 (dd, J = 9.1, 2.8 Hz, 1H), 6.68 (d, J = 9.1 Hz, 1H), 3.55
(s, 3H), 3.41 (t, J = 5.1 Hz, 4H), 1.61 (q, J = 7.8, 7.3 Hz, 6H). LRMS (APCI): calcd for C19H21N5O4S 415.3 Da, measured 416.1 m/z [M + H]^+^.
(13)
To a 20 mL scintillation vial was added
2-((3R,5R)-3,5-dimethylpiperidin-1-yl)-5-nitropyridine
(100 mg, 426 μmol, 1 equiv), 10% Pd/C (28 mg), and MeOH (5 mL).
The reaction was stirred under a hydrogen atmosphere (50 psi) for
20 min. The reaction mixture was then filtered through a pad of Celite
and concentrated to give 6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-amine (87 mg). To a 20 mL
scintillation vial was added 6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-amine (43 mg, 0.2 mmol), CH2Cl2 (2 mL) and pyridine (0.2 mL). The reaction
was stirred for 1 h, followed by the addition of 20% EtOAc/hexanes
(1 mL) and water (5 drops). The resultant solution containing precipitate
was sonicated, and the solid then filtered to give N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-1-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-sulfonamide
(29 mg, 31%) as an off-white solid. ^1^H NMR (400 MHz, DMSO-d6) δ 11.83 (s, 1H), 9.90 (s, 1H), 8.25
(d, J = 2.3 Hz, 1H), 7.93 (dd, J = 8.8, 2.3 Hz, 1H), 7.64 (d, J = 2.7 Hz, 1H), 7.57
(d, J = 8.9 Hz, 1H), 7.20 (dd, J = 9.2, 2.7 Hz, 1H), 6.79 (d, J = 9.2 Hz, 1H), 3.51
(dd, J = 12.8, 3.8 Hz, 2H), 3.45 (s, 3H), 3.11 (dd, J = 12.9, 6.9 Hz, 2H), 1.87 (dq, J = 12.7,
6.3 Hz, 2H), 1.40 (t, J = 5.8 Hz, 2H), 0.86 (d, J = 6.8 Hz, 6H). LRMS (APCI): calcd for C21H25N5O4S 443.2 Da, measured 444.2 m/z [M + H]^+^.
(14)
The exact procedure for the synthesis of 13 was followed to synthesize 14, providing 22
mg (23%) as a white solid. ^1^H NMR (400 MHz, DMSO-d6) δ 11.83 (s, 1H), 9.83 (s, 1H), 8.25
(d, J = 2.3 Hz, 1H), 7.92 (dd, J = 8.8, 2.3 Hz, 1H), 7.65 (d, J = 2.7 Hz, 1H), 7.57
(d, J = 8.9 Hz, 1H), 7.16 (dd, J = 9.1, 2.8 Hz, 1H), 6.72 (d, J = 9.1 Hz, 1H), 3.50
(dd, J = 12.8, 3.7 Hz, 2H), 3.45 (s, 3H), 3.08 (dd, J = 12.8, 6.8 Hz, 2H), 1.86 (dq, J = 10.2,
6.2 Hz, 2H), 1.39 (t, J = 5.8 Hz, 2H), 0.85 (d, J = 6.8 Hz, 6H). LRMS (APCI): calcd for C21H25N5O4S 443.2 Da, measured 444.2 m/z [M + H]^+^.
To a 50 mL round-bottom flask cooled to 0 °C was added 2-chloro-5-nitropyridine (1.0 g, 6.3 mmol, 1 equiv), 3,5-dimethylpiperidine (1.45 g, 1.70 mL, 12.6 mmol, 2 equiv), triethylamine (0.9 mL, 6.3 mmol, 1 equiv), and THF (20 mL). The reaction was stirred overnight and filtered. The filtrate was washed with brine, dried over sodium sulfate, and concentrated in vacuo to give 1.4 g of crude 2-(3,5-dimethylpiperidin-1-yl)-5-nitropyridine.
To a 100 mL reaction vial was added 2-(3,5-dimethylpiperidin-1-yl)-5-nitropyridine (1.4 g, 6.0 mmol, 1 equiv), methanol (20 mL), ethyl acetate (10 mL), and 10% Pd/C (500 mg). The reaction was stirred under hydrogen (50 psi) for 2 h, followed by filtration, concentration, and purification using silica gel chromatography (0–20% EtOAc/hexanes) to give 6-(3,5-dimethylpiperidin-1-yl)pyridin-3-amine (1.1 g, 90%).
To a 40 mL scintillation vial was added 6-(3,5-dimethylpiperidin-1-yl)pyridin-3-amine
(335 mg, 1.22 mmol, 1 equiv), pyridine (2 mL), and 1-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-sulfonyl
chloride (251 mg, 1.22 mmol, 1 equiv). The reaction was stirred for
30 min at 40 °C, concentrated, and purified using silica gel
chromatography and then reverse phase HPLC (20–90% CH3CN/H2O over 35 min). The second compound to elute from
the column was N-(6-((3R,5S)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-1-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazoline-6-sulfonamide
(204 mg, 38%). ^1^H NMR (400 MHz, DMSO-d6) δ 11.83 (s, 1H), 9.84 (s, 1H), 8.24 (d, J = 2.3 Hz, 1H), 7.91 (dd, J = 8.9, 2.4
Hz, 1H), 7.68 (d, J = 2.7 Hz, 1H), 7.57 (d, J = 8.9 Hz, 1H), 7.17 (dd, J = 9.1, 2.8
Hz, 1H), 6.72 (d, J = 9.1 Hz, 1H), 4.15 (dd, J = 12.9, 3.9 Hz, 2H), 3.44 (s, 3H), 2.23–2.13 (m,
2H), 1.73 (d, J = 12.7 Hz, 1H), 1.48 (ddd, J = 22.4, 7.0, 3.6 Hz, 1H), 1.48 (s, 2H), 0.85 (d, J = 6.6 Hz, 6H). LRMS (APCI): calcd for C21H25N5O4S 443.2 Da, measured 442.2 m/z [M – H]^−^.
SEMCl (7.5 g. 45 mmol, 1.25 equiv) was added
to a stirring solution of 6-bromo-2-methylquinazolin-4(3H)-one (8.0 g, 36 mmol, 1 equiv) and DIPEA (8 mL, 45 mmol, 1.25 equiv)
in CH2Cl2 (200 mL). After 14 h, the reaction
was concentrated and purified using silica gel column chromatography
(10–30% EtOAc/hexanes) to give 6-bromo-2-methyl-3-((2-(trimethylsilyl)ethoxy)methyl)quinazolin-4(3H)-one (8.4 g, 64%) as a yellow oil. ^1^H NMR (400
MHz, Methanol-d4) δ 8.31 (t, J = 1.9 Hz, 1H),
7.92 (ddd, J = 8.6, 2.1, 1.0 Hz, 1H), 7.53 (dd, J = 8.7, 1.2 Hz, 1H), 5.61 (d, J = 1.3
Hz, 2H), 3.83–3.58 (m, 2H), 2.70 (d, J = 1.3
Hz, 3H), 1.10–0.82 (m, 2H), 0.10 (s, 9H). LRMS (APCI): calcd
for C15H21BrN2O2Si 368.1
Da, measured 369.1 m/z [M + H]^+^.
To a 250 mL round-bottom flask was added 6-bromo-2-methyl-3-((2-(trimethylsilyl)ethoxy)methyl)quinazolin-4(3H)-one (8.4 g, 2.3 mmol, 1.0 equiv), benzophenone imine (4.5, 25 mmol, 1.1 equiv), tris(dibenzylideneacetone)dipalladium (1.05 g, 0.12 mmol, 0.05 equiv), BINAP (2.14 g, 0.35 mmol, 0.15 equiv), sodium tert-butoxide (3.1, 32 mmol, 1.4 equiv), and toluene (100 mL). The reaction mixture was heated to reflux and stirred for 1 h. The reaction was then washed with saturated sodium bicarbonate and the organic layer was separated, dried over sodium sulfate, and concentrated. The resultant crude oil was dissolved in methanol (200 mL), followed by the addition of potassium acetate (6.8 g, 6.9 mmol, 3.0 equiv) and hydroxylamine hydrochloride (4.0 g, 58 mmol, 25.0 equiv). The reaction was stirred at rt for 90 min. The reaction was then washed with saturated sodium bicarbonate, and the organic layer was separated, dried over sodium sulfate, and concentrated. The resultant crude oil was purified using silica gel chromatography to give 6-amino-2-methyl-3-((2-(trimethylsilyl)ethoxy)methyl)quinazolin-4(3H)-one (3.3 g, 47%) as a pale yellow solid.
Chloride
To a 100 mL round-bottom flask (A) was added copper(II) chloride (0.48 g, 10.8 mmol, 0.3 equiv) and acetic acid (16 mL), and sulfur dioxide was bubbled into the mixture through a gas dispersion tube. In a separate 100 mL round-bottom flask (B) was added 6-amino-2-methyl-3-((2-(trimethylsilyl)ethoxy)methyl)quinazolin-4(3H)-one (3.3 g, 10.8 mmol, 1.0 equiv), acetonitrile (10 mL), and concentrated HCl (5 mL). This mixture (B) was cooled to −5 °C, followed by the addition of sodium nitrite (0.75 g, 10.8 mmol, 1.0 equiv) dissolved in water (5 mL). The reaction mixture (B) was stirred for 5 min at −5 °C. The contents of round-bottom flask B were then poured in round-bottom A, and the combined reaction mixture was stirred for 5 min at −5 °C and then warmed to rt. The reaction was then extracted using EtOAc/water, and the organic layer was separated, washed with saturated sodium bicarbonate solution, dried over sodium sulfate, and concentrated. The resultant crude oil was purified using silica gel chromatography (20–50% EtOAc/hexanes) to give 2-methyl-4-oxo-3-((2-(trimethylsilyl)ethoxy)methyl)-3,4-dihydroquinazoline-6-sulfonyl chloride (2.75 g, 65%) as a pale orange oil. ^1^H NMR (400 MHz, Chloroform-d) δ 8.91 (d, J = 2.4 Hz, 1H), 8.26 (dd, J = 8.8, 2.4 Hz, 1H), 7.77 (d, J = 8.7 Hz, 1H), 5.57 (s, 2H), 3.73–3.64 (m, 2H), 2.75 (s, 3H), 0.99–0.88 (m, 2H), −0.02 (s, 9H).
(16)
2-((3R,5R)-3,5-dimethylpiperidin-1-yl)-5-nitropyridine (100 mg, 0.5 mmol,
1.0 equiv) and Pd/C (28 mg, 10% Pd by mass, 0.026 mmol, 0.05 equiv)
were suspended in MeOH (5 mL) and then stirred under a hydrogen atmosphere
(50 psi) for 30 min. The reaction was filtered, concentrated, and
dried under high vacuum. The resultant solid was dissolved in pyridine
(0.08 g, 1.01 mmol, 2 equiv) and CH2Cl2 (2 mL),
and 2-methyl-4-oxo-3-((2-(trimethylsilyl)ethoxy)methyl)-3,4-dihydroquinazoline-6-sulfonyl
chloride (83 mg, 0.215 mmol, 0.45 equiv) was added. The reaction was
stirred for 1 h, filtered through a plug of silica (10 → 30%
EtOAc/hexanes), concentrated, and dissolved in MeOH (0.5 mL). HCl
(4 N in dioxanes, 3 mL) was then added, and the reaction heated to
90 °C for 10 min. The reaction was cooled to rt, concentrated,
and purified using silica gel chromatography (0–10% MeOH/CH2Cl2) to give N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-2-methyl-5-(methylamino)-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
(16) as a tan solid (19 mg, 20% over 3 steps). ^1^H NMR (400 MHz, Methanol-d4) δ 8.43 (d, J =
2.1 Hz, 1H), 7.98 (dd, J = 8.6, 2.1 Hz, 1H), 7.67
(d, J = 8.7 Hz, 1H), 7.56 (d, J =
2.7 Hz, 1H), 7.25 (dd, J = 9.2, 2.7 Hz, 1H), 6.67
(d, J = 9.2 Hz, 1H), 3.51 (dd, J = 12.9, 3.7 Hz, 2H), 3.10 (dd, J = 12.9, 6.9 Hz,
2H), 2.46 (d, J = 1.4 Hz, 3H), 1.92 (ddt, J = 13.0, 10.5, 4.3 Hz, 2H), 1.46 (t, J = 5.8 Hz, 2H), 0.91 (d, J = 6.8 Hz, 6H). LRMS (APCI):
calcd for C21H25N5O3S
427.2 Da, measured 428.1 m/z [M
To a 1 L round-bottom flask was added methyl 2-amino-5-bromo-4-fluorobenzoate
(25.0 g, 0.1 mol), 4 N HCl in dioxanes (300 mL), and acetonitrile
(350 mL). The mixture was heated to 90 °C and stirred overnight.
The reaction was then concentrated, and the resultant solid was resuspended
in acetonitrile. Aqueous sodium hydroxide (1 N) was used to adjust
the pH to 8–9, and the solid was filtered, washed with cold
acetonitrile, and dried in vacuo to give 6-bromo-7-fluoro-2-methylquinazolin-4(3H)-one (24.0 g, 93%). ^1^H NMR (400 MHz, DMSO-d6) δ 12.45 (s, 1H), 8.27 (d, J = 7.7 Hz, 1H), 7.54 (d, J = 10.0 Hz, 1H), 3.32
(s, 3H).
6-Bromo-7-fluoro-2-methylquinazolin-4(3H)-one (15.0 g, 58.4 mmol, 1 equiv) was added to a 1 L round-bottom
flask and dissolved with dioxane (300 mL) and toluene (300 mL), followed
by the addition of diisopropylethylamine (15.0 g, 20.3 mL, 116 mol,
2.0 equiv). The mixture was heated to 90 °C, followed by the
addition of phenylmethanethiol (7.6 g, 7.3 mL, 61.3 mmol, 1.05 equiv),
xantphos (5.1 g, 8.9 mmol, 0.15 equiv) and tris(dibenzylideneacetone)dipalladium
(5.3 g, 5.8 mmol, 0.1 equiv). The reaction mixture was heated at 90
°C for 6 h and then cooled to 0 °C. The resultant solid
was filtered, washed with water, and dried in vacuo to give 6-(benzylthio)-7-fluoro-2-methylquinazolin-4(3H)-one (15.7 g, 90%) as a yellow-green solid. ^1^H NMR (400 MHz, DMSO-d6) δ 12.28
(s, 1H), 8.26 (s, 1H), 7.95 (d, J = 8.2 Hz, 1H),
7.38–7.15 (m, 5H), 4.27 (s, 2H), 2.29 (s, 3H).
To a 500 mL round-bottom flask was added 6-(benzylthio)-7-fluoro-2-methylquinazolin-4(3H)-one (9.5 g, 31.7 mmol, 1 equiv), acetic acid (200 mL), and water (50 mL). The mixture was cooled with an ice bath to ca. 0 °C, and N-chlorosuccinimide (14.7 g, 110.8 mmol, 3.5 equiv) was added. The reaction mixture was stirred for 5 h at 0 °C, and then at rt for 5 h. The reaction mixture was then extracted using EtOAc (800 mL) and brine (300 mL), and the organic layer was separated, dried over sodium sulfate, and concentrated. The crude product was purified using silica gel chromatography (hexanes/EtOAc) to give 7-fluoro-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonyl chloride (3.9 g, 49%) as a white solid.
To a 1 L round-bottom flask was added 6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-amine (8.0 g, 39
mmol, 1 equiv) and pyridine (200 mL), followed by a suspension of
7-fluoro-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonyl chloride
(16.1 g, 58.5 mmol, 1.5 equiv) in methylene chloride (300 mL). The
reaction mixture was stirred at rt for 1 h and then concentrated.
The crude product was purified using silica gel chromatography (100%
Et2O, then 100% ethyl acetate) to give N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-7-fluoro-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
(9.5 g, 55%) as a dark purple solid.
(17)
To a 20 mL microwave reaction tube was
added N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-7-fluoro-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
(0.5 g, 1.1 mmol) and methylamine (6 mL, 40% in water). The tube was
sealed and the reaction was heated within a microwave reactor at 130
°C for 30 min. The pH of the reaction was then adjusted to 7
followed by extraction with ethyl acetate and brine. The organic layer
was dried over sodium sulfate and concentrated. The crude product
was purified using reverse phase column chromatography (20–90%
CH3CN/H2O over 35 min) to give N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-2-methyl-7-(methylamino)-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
(195 mg, 38%) as a white solid. ^1^H NMR (400 MHz, DMSO-d6) δ 11.94 (s, 1H), 9.80 (s, 1H), 8.08
(s, 1H), 7.61 (d, J = 2.6 Hz, 1H), 7.07 (dd, J = 9.1, 2.7 Hz, 1H), 6.66 (d, J = 9.2
Hz, 1H), 6.62 (s, 1H), 6.32 (q, J = 4.7 Hz, 1H),
3.48 (dd, J = 12.8, 3.7 Hz, 2H), 3.06 (dd, J = 12.8, 6.8 Hz, 2H), 2.88 (d, J = 4.8
Hz, 3H), 2.27 (s, 3H), 1.81 (dddd, J = 13.4, 9.6,
6.7, 3.8 Hz, 2H), 1.36 (t, J = 5.8 Hz, 2H), 0.81
(d, J = 6.8 Hz, 6H). LRMS (APCI): calcd for C22H28N6O3S 456.2 Da, measured
457.2 m/z [M + H]^+^.
(18)
To a microwave reaction tube was added N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-7-fluoro-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
(2.8 g, 6.3 mmol) and sodium methoxide (120 mL of a 25% solution in
methanol). The tube was sealed and the reaction was heated to 130
°C for 35 min. The reaction was then concentrated and purified
by reverse phase HPLC (20–90% CH3CN/H2O over 35 min) to give a crude solid that was dissolved in ethyl
acetate and washed with aqueous sodium bicarbonate and brine. The
organic layer was dried over sodium sulfate and concentrated to give N-(6-((3R,5R)-3,5-dimethylpiperidin-1-yl)pyridin-3-yl)-7-methoxy-2-methyl-4-oxo-3,4-dihydroquinazoline-6-sulfonamide
1.61 g (56%) as an off-white solid. ^1^H NMR (400 MHz, DMSO-d6) δ 12.33 (s, 1H), 9.55 (s, 1H), 8.22
(s, 1H), 7.67 (d, J = 2.6 Hz, 1H), 7.21 (s, 1H),
7.15 (dd, J = 9.1, 2.7 Hz, 1H), 6.65 (d, J = 9.2 Hz, 1H), 4.03 (s, 3H), 3.45 (dd, J = 12.8, 3.7 Hz, 2H), 3.03 (dd, J = 12.8, 6.8 Hz,
2H), 2.33 (s, 3H), 1.82 (pd, J = 6.4, 3.8 Hz, 2H),
1.36 (t, J = 5.8 Hz, 2H), 0.82 (d, J = 6.8 Hz, 6H). LRMS (APCI): calcd for C22H27N5O4S 457.2 Da, measured 458.2 m/z [M + H]^+^.